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I’m thrilled to report that I’ve been promoted to the position of Director of our bioinformatics group here at the University of Iowa ..read more
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I just returned from another great experience at Great Lakes Bio 2019 (#GLBIO2019), a regional meeting of the International Society of ..read more
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Bcbio is a configuration-based pipeline manager for common NGS workflows. It uses a YAML-config file to set all of the inputs and ..read more
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Seurat is a popular R/Bioconductor package for working with single-cell RNA-seq data. As part of the very first steps of filtering and ..read more
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Single-cell RNA-Seq methods, which sequence and barcode the transcripts within individual cells in a sample, hold enormous promise for ..read more
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The ubiquitous RNAseq analysis package, DESeq2, is a very useful and convenient way to conduct DE gene analyses.  However, it lacks some ..read more
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I recently ran across a situation that I think is going to be increasingly common as I do more and more single-cell analyses.   ..read more
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Excited to announce that I’ve been working with some fantastic computational biologists (that I met at ISMB2018) on a “10 simple rules ..read more
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Recap: Welcome to the second part of this post series on building artificial neural network models for copy number classification.  In the ..read more
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