Pooled multicolour tagging for visualizing subcellular protein dynamics
Nature Cell Biology
by Andreas Reicher, Jiří Reiniš, Maria Ciobanu, Pavel Růžička, Monika Malik, Marton Siklos, Victoria Kartysh, Tatjana Tomek, Anna Koren, André F. Rendeiro, Stefan Kubicek
5d ago
Nature Cell Biology, Published online: 19 April 2024; doi:10.1038/s41556-024-01407-w Reicher, Reiniš et al. report a method for multicolour tagging using genome-scale intron-targeting sgRNA libraries that, in combination with computer vision, enables the systematic detection of protein localization changes ..read more
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Next questions in autophagy
Nature Cell Biology
by Ana Maria Cuervo, Zvulun Elazar, Chantell Evans, Liang Ge, Malene Hansen, Marja Jäättelä, Jin Rui (Amos) Liang, Ben Loos, Noboru Mizushima, Anna Katharina Simon, Sharon Tooze, Tamotsu Yoshimori, Shuhei Nakamura
5d ago
Nature Cell Biology, Published online: 19 April 2024; doi:10.1038/s41556-024-01404-z Our understanding of the basic mechanisms of autophagy is growing, but many questions remain about the types of autophagy cells use, when they use them, and how they function in different contexts. We asked emerging and established leaders in the field to discuss the questions and areas that they are most excited about to deepen our understanding of autophagy ..read more
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Accelerating data sharing and reuse in volume electron microscopy
Nature Cell Biology
by Kirk James Czymmek, Ilya Belevich, Johanna Bischof, Aastha Mathur, Lucy Collinson, Eija Jokitalo
1w ago
Nature Cell Biology, Published online: 12 April 2024; doi:10.1038/s41556-024-01381-3 Volume electron microscopy (vEM) generates large 3D volumes of cells or tissues at nanoscale resolutions, enabling analyses of organelles in their cellular environment. Here, we provide examples of vEM in cell biology and discuss community efforts to develop standards in sample preparation and image acquisition for enhanced reproducibility and data reuse ..read more
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A CRISPRi/a screening platform to study cellular nutrient transport in diverse microenvironments
Nature Cell Biology
by Christopher Chidley, Alicia M. Darnell, Benjamin L. Gaudio, Evan C. Lien, Anna M. Barbeau, Matthew G. Vander Heiden, Peter K. Sorger
2w ago
Nature Cell Biology, Published online: 11 April 2024; doi:10.1038/s41556-024-01402-1 Chidley et al. report a CRISPR interference/activation screening platform to systematically interrogate the contribution of nutrient transporters to support cancer cell proliferation in environments of variable composition ..read more
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Transcription-coupled repair of DNA–protein cross-links depends on CSA and CSB
Nature Cell Biology
by Christopher J. Carnie, Aleida C. Acampora, Aldo S. Bader, Chimeg Erdenebat, Shubo Zhao, Elnatan Bitensky, Diana van den Heuvel, Avital Parnas, Vipul Gupta, Giuseppina D’Alessandro, Matylda Sczaniecka-Clift, Pedro Weickert, Fatih Aygenli, Maximilian J. Götz, Jacqueline Cordes, Isabel Esain-Garcia, Larry Melidis, Annelotte P. Wondergem, Simon Lam, Maria S. Robles, Shankar Balasubramanian, Sheera Adar, Martijn S. Luijsterburg, Stephen P. Jackson, Julian Stingele
2w ago
Nature Cell Biology, Published online: 10 April 2024; doi:10.1038/s41556-024-01391-1 Three studies identify a transcription-coupled DNA–protein cross-link repair pathway that depends on the Cockayne syndrome proteins and the proteasome ..read more
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Endogenous aldehyde-induced DNA–protein crosslinks are resolved by transcription-coupled repair
Nature Cell Biology
by Yasuyoshi Oka, Yuka Nakazawa, Mayuko Shimada, Tomoo Ogi
2w ago
Nature Cell Biology, Published online: 10 April 2024; doi:10.1038/s41556-024-01401-2 Three studies identify a transcription-coupled DNA–protein crosslink repair pathway that depends on the Cockayne syndrome proteins and the proteasome ..read more
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Transcription-coupled DNA–protein crosslink repair by CSB and CRL4CSA-mediated degradation
Nature Cell Biology
by Marjolein van Sluis, Qing Yu, Melanie van der Woude, Camila Gonzalo-Hansen, Shannon C. Dealy, Roel C. Janssens, Hedda B. Somsen, Anisha R. Ramadhin, Dick H. W. Dekkers, Hannah Lena Wienecke, Joris J. P. G. Demmers, Anja Raams, Carlota Davó-Martínez, Diana A. Llerena Schiffmacher, Marvin van Toorn, David Häckes, Karen L. Thijssen, Di Zhou, Judith G. Lammers, Alex Pines, Wim Vermeulen, Joris Pothof, Jeroen A. A. Demmers, Debbie L. C. van den Berg, Hannes Lans, Jurgen A. Marteijn
2w ago
Nature Cell Biology, Published online: 10 April 2024; doi:10.1038/s41556-024-01394-y Three studies identify a transcription-coupled DNA–protein crosslink repair pathway that depends on the Cockayne syndrome proteins and the proteasome ..read more
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Tissue pressure and YAP during organogenesis
Nature Cell Biology
by Qian Xu, Thomas G. H. Diekwisch
2w ago
Nature Cell Biology, Published online: 10 April 2024; doi:10.1038/s41556-024-01392-0 Organ morphogenesis begins with proliferation, which results in tissue pressures and site-specific YAP expression, nuclear translocation and signalling. A study now reports the involvement of anisotropy, localized pressure and YAP signalling in organizer-forming cascades, introducing a new chapter of molecular mechanobiology of organogenesis ..read more
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Adding a transcription-coupled repair pathway
Nature Cell Biology
by Marco Saponaro
2w ago
Nature Cell Biology, Published online: 10 April 2024; doi:10.1038/s41556-024-01399-7 When transcription by RNA polymerase II is stalled by ultraviolet-induced DNA damage, it recruits repair factors, leading to excision of the damaged site and DNA synthesis to fill the gap. Three new studies show that, for aldehyde-induced DNA crosslinks, repair is activated by the same factors, but without base excision and gap filling ..read more
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CD32 captures committed haemogenic endothelial cells during human embryonic development
Nature Cell Biology
by Rebecca Scarfò, Lauren N. Randolph, Monah Abou Alezz, Mahassen El Khoury, Amélie Gersch, Zhong-Yin Li, Stephanie A. Luff, Andrea Tavosanis, Giulia Ferrari Ramondo, Sara Valsoni, Sara Cascione, Emma Didelon, Laura Passerini, Giada Amodio, Chiara Brandas, Anna Villa, Silvia Gregori, Ivan Merelli, Jean-Noël Freund, Christopher M. Sturgeon, Manuela Tavian, Andrea Ditadi
2w ago
Nature Cell Biology, Published online: 09 April 2024; doi:10.1038/s41556-024-01403-0 Scarfò, Randolph et al. perform transcriptomic analysis of 28- to 32-day human embryos and identify CD32 as a marker of haemogenic endothelial cells (HECs), thus providing a strategy to isolate HECs from human embryos and pluripotent stem cell cultures ..read more
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