Accelerating data sharing and reuse in volume electron microscopy
Nature Cell Biology
by Kirk James Czymmek, Ilya Belevich, Johanna Bischof, Aastha Mathur, Lucy Collinson, Eija Jokitalo
6d ago
Nature Cell Biology, Published online: 12 April 2024; doi:10.1038/s41556-024-01381-3 Volume electron microscopy (vEM) generates large 3D volumes of cells or tissues at nanoscale resolutions, enabling analyses of organelles in their cellular environment. Here, we provide examples of vEM in cell biology and discuss community efforts to develop standards in sample preparation and image acquisition for enhanced reproducibility and data reuse ..read more
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A CRISPRi/a screening platform to study cellular nutrient transport in diverse microenvironments
Nature Cell Biology
by Christopher Chidley, Alicia M. Darnell, Benjamin L. Gaudio, Evan C. Lien, Anna M. Barbeau, Matthew G. Vander Heiden, Peter K. Sorger
1w ago
Nature Cell Biology, Published online: 11 April 2024; doi:10.1038/s41556-024-01402-1 Chidley et al. report a CRISPR interference/activation screening platform to systematically interrogate the contribution of nutrient transporters to support cancer cell proliferation in environments of variable composition ..read more
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Transcription-coupled repair of DNA–protein cross-links depends on CSA and CSB
Nature Cell Biology
by Christopher J. Carnie, Aleida C. Acampora, Aldo S. Bader, Chimeg Erdenebat, Shubo Zhao, Elnatan Bitensky, Diana van den Heuvel, Avital Parnas, Vipul Gupta, Giuseppina D’Alessandro, Matylda Sczaniecka-Clift, Pedro Weickert, Fatih Aygenli, Maximilian J. Götz, Jacqueline Cordes, Isabel Esain-Garcia, Larry Melidis, Annelotte P. Wondergem, Simon Lam, Maria S. Robles, Shankar Balasubramanian, Sheera Adar, Martijn S. Luijsterburg, Stephen P. Jackson, Julian Stingele
1w ago
Nature Cell Biology, Published online: 10 April 2024; doi:10.1038/s41556-024-01391-1 Three studies identify a transcription-coupled DNA–protein cross-link repair pathway that depends on the Cockayne syndrome proteins and the proteasome ..read more
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Endogenous aldehyde-induced DNA–protein crosslinks are resolved by transcription-coupled repair
Nature Cell Biology
by Yasuyoshi Oka, Yuka Nakazawa, Mayuko Shimada, Tomoo Ogi
1w ago
Nature Cell Biology, Published online: 10 April 2024; doi:10.1038/s41556-024-01401-2 Three studies identify a transcription-coupled DNA–protein crosslink repair pathway that depends on the Cockayne syndrome proteins and the proteasome ..read more
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Transcription-coupled DNA–protein crosslink repair by CSB and CRL4CSA-mediated degradation
Nature Cell Biology
by Marjolein van Sluis, Qing Yu, Melanie van der Woude, Camila Gonzalo-Hansen, Shannon C. Dealy, Roel C. Janssens, Hedda B. Somsen, Anisha R. Ramadhin, Dick H. W. Dekkers, Hannah Lena Wienecke, Joris J. P. G. Demmers, Anja Raams, Carlota Davó-Martínez, Diana A. Llerena Schiffmacher, Marvin van Toorn, David Häckes, Karen L. Thijssen, Di Zhou, Judith G. Lammers, Alex Pines, Wim Vermeulen, Joris Pothof, Jeroen A. A. Demmers, Debbie L. C. van den Berg, Hannes Lans, Jurgen A. Marteijn
1w ago
Nature Cell Biology, Published online: 10 April 2024; doi:10.1038/s41556-024-01394-y Three studies identify a transcription-coupled DNA–protein crosslink repair pathway that depends on the Cockayne syndrome proteins and the proteasome ..read more
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Tissue pressure and YAP during organogenesis
Nature Cell Biology
by Qian Xu, Thomas G. H. Diekwisch
1w ago
Nature Cell Biology, Published online: 10 April 2024; doi:10.1038/s41556-024-01392-0 Organ morphogenesis begins with proliferation, which results in tissue pressures and site-specific YAP expression, nuclear translocation and signalling. A study now reports the involvement of anisotropy, localized pressure and YAP signalling in organizer-forming cascades, introducing a new chapter of molecular mechanobiology of organogenesis ..read more
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Adding a transcription-coupled repair pathway
Nature Cell Biology
by Marco Saponaro
1w ago
Nature Cell Biology, Published online: 10 April 2024; doi:10.1038/s41556-024-01399-7 When transcription by RNA polymerase II is stalled by ultraviolet-induced DNA damage, it recruits repair factors, leading to excision of the damaged site and DNA synthesis to fill the gap. Three new studies show that, for aldehyde-induced DNA crosslinks, repair is activated by the same factors, but without base excision and gap filling ..read more
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CD32 captures committed haemogenic endothelial cells during human embryonic development
Nature Cell Biology
by Rebecca Scarfò, Lauren N. Randolph, Monah Abou Alezz, Mahassen El Khoury, Amélie Gersch, Zhong-Yin Li, Stephanie A. Luff, Andrea Tavosanis, Giulia Ferrari Ramondo, Sara Valsoni, Sara Cascione, Emma Didelon, Laura Passerini, Giada Amodio, Chiara Brandas, Anna Villa, Silvia Gregori, Ivan Merelli, Jean-Noël Freund, Christopher M. Sturgeon, Manuela Tavian, Andrea Ditadi
1w ago
Nature Cell Biology, Published online: 09 April 2024; doi:10.1038/s41556-024-01403-0 Scarfò, Randolph et al. perform transcriptomic analysis of 28- to 32-day human embryos and identify CD32 as a marker of haemogenic endothelial cells (HECs), thus providing a strategy to isolate HECs from human embryos and pluripotent stem cell cultures ..read more
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Fatty acyl-coenzyme A activates mitochondrial division through oligomerization of MiD49 and MiD51
Nature Cell Biology
by Ao Liu, Frieda Kage, Asan F. Abdulkareem, Mac Pholo Aguirre-Huamani, Gracie Sapp, Halil Aydin, Henry N. Higgs
1w ago
Nature Cell Biology, Published online: 09 April 2024; doi:10.1038/s41556-024-01400-3 Liu et al. find that long-chain acyl-coenzyme A activates two mitochondrial fission proteins, MiD49 and MiD51, by inducing their oligomerization. This activates their ability to stimulate DRP1 GTPase activity and triggers mitochondrial division ..read more
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Transcription bodies regulate gene expression by sequestering CDK9
Nature Cell Biology
by Martino Ugolini, Maciej A. Kerlin, Ksenia Kuznetsova, Haruka Oda, Hiroshi Kimura, Nadine L. Vastenhouw
1w ago
Nature Cell Biology, Published online: 08 April 2024; doi:10.1038/s41556-024-01389-9 Ugolini et al. show that transcription bodies regulate gene expression during zygotic genome activation in zebrafish development by sequestering CDK9 to limit the transcription of genes away from transcription bodies ..read more
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