Unlocking saponin biosynthesis in soapwort
Nature Chemical Biology
by Seohyun Jo, Amr El-Demerdash, Charlotte Owen, Vikas Srivastava, Dewei Wu, Shingo Kikuchi, James Reed, Hannah Hodgson, Alex Harkess, Shengqiang Shu, Chris Plott, Jerry Jenkins, Melissa Williams, Lori-Beth Boston, Elia Lacchini, Tongtong Qu, Alain Goossens, Jane Grimwood, Jeremy Schmutz, Jim Leebens-Mack, Anne Osbourn
3d ago
Nature Chemical Biology, Published online: 23 July 2024; doi:10.1038/s41589-024-01681-7 Soapwort (Saponaria officinalis) is a rich reservoir of triterpenoid glycosides that often have important pharmaceutical, nutraceutical and agronomical potential. Here, the authors elucidate the complete biosynthetic pathway of saponarioside B, a major saponin constituent in soapwort ..read more
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Macrolones target bacterial ribosomes and DNA gyrase and can evade resistance mechanisms
Nature Chemical Biology
by Elena V. Aleksandrova, Cong-Xuan Ma, Dorota Klepacki, Faezeh Alizadeh, Nora Vázquez-Laslop, Jian-Hua Liang, Yury S. Polikanov, Alexander S. Mankin
3d ago
Nature Chemical Biology, Published online: 22 July 2024; doi:10.1038/s41589-024-01685-3 Hybrids of macrolides and quinolones, called macrolones, can overcome macrolide-induced resistance through new interactions between the quinolone moiety and the ribosome and can concurrently inhibit both ribosome and DNA gyrase targets ..read more
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Targeting Smurf1 to block PDK1–Akt signaling in KRAS-mutated colorectal cancer
Nature Chemical Biology
by Zhiqiang Peng, Wei Fang, Bo Wu, Ming He, Shaohua Li, Jun Wei, Yang Hao, Lujia Jin, Mingqiu Liu, Xin Zhang, Yange Wei, Yingwei Ge, Yinghua Wei, Haili Qian, Yangjun Zhang, Junyi Jiang, Zhijie Chang, Yu Rao, Xueli Zhang, Chun-Ping Cui, Lingqiang Zhang
3d ago
Nature Chemical Biology, Published online: 22 July 2024; doi:10.1038/s41589-024-01683-5 SMAD ubiquitylation regulatory factor 1 (Smurf1) was identified as a critical activator of the phosphoinositide 3-kinase (PI3K)–Akt pathway by promoting phosphoinositide-dependent protein kinase 1 (PDK1) neddylation and cytoplasmic complex of PDK1 assembled with Smurf1 and SETDB1 (cCOMPASS) assembly. Smurf1-antagonizing repressor of tumor 1 (SMART1), a highly selective degrader for Smurf1, was developed and suppressed the tumor growth of Kirsten rat sarcoma viral oncogene homolog (KRAS) mutant colorectal ca ..read more
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Lysine l-lactylation is the dominant lactylation isomer induced by glycolysis
Nature Chemical Biology
by Di Zhang, Jinjun Gao, Zhijun Zhu, Qianying Mao, Zhiqiang Xu, Pankaj K. Singh, Cornelius C. Rimayi, Carlos Moreno-Yruela, Shuling Xu, Gongyu Li, Yi-Cheng Sin, Yue Chen, Christian A. Olsen, Nathaniel W. Snyder, Lunzhi Dai, Lingjun Li, Yingming Zhao
1w ago
Nature Chemical Biology, Published online: 19 July 2024; doi:10.1038/s41589-024-01680-8 Using a combination of antibody- and LC–MS/MS-based methods, Zhang et al. reveal lysine l-lactylation as the key lactylation isomer in cellular histones, responding dynamically to glycolysis and positively correlating with lactyl-CoA levels, providing insights into the Warburg effect ..read more
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Machine learning in preclinical drug discovery
Nature Chemical Biology
by Denise B. Catacutan, Jeremie Alexander, Autumn Arnold, Jonathan M. Stokes
1w ago
Nature Chemical Biology, Published online: 19 July 2024; doi:10.1038/s41589-024-01679-1 This Perspective discusses the application of algorithmic methods throughout the preclinical phases of drug discovery to accelerate initial hit discovery, mechanism-of-action elucidation and chemical property optimization ..read more
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Direct observation of prion-like propagation of protein misfolding templated by pathogenic mutants
Nature Chemical Biology
by Krishna Neupane, Abhishek Narayan, Supratik Sen Mojumdar, Gaurav Adhikari, Craig R. Garen, Michael T. Woodside
1w ago
Nature Chemical Biology, Published online: 15 July 2024; doi:10.1038/s41589-024-01672-8 Protein misfolding can spread from one molecule to another in infectious prion diseases. The propagation of protein misfolding has been directly observed in single protein molecules. These results showed that pathogenic mutants of the protein superoxide dismutase-1 (SOD1), which causes familial amyotrophic lateral sclerosis, imprint their misfolding onto native wild-type molecules ..read more
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The power supply for biological nitrogen fixation
Nature Chemical Biology
by Günter Fritz, Peter M. H. Kroneck, Julia Steuber
2w ago
Nature Chemical Biology, Published online: 10 July 2024; doi:10.1038/s41589-024-01663-9 Biological reduction of dinitrogen by nitrogenase requires high-energy electrons to form ammonium ion. A new study reveals the structure and function of a molecular machine that exploits the proton-motive force to provide a powerful reductant used by the nitrogen-reducing system of the soil bacterium Azotobacter vinelandii ..read more
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Simultaneous multi-site editing of individual genomes using retron arrays
Nature Chemical Biology
by Alejandro González-Delgado, Santiago C. Lopez, Matías Rojas-Montero, Chloe B. Fishman, Seth L. Shipman
2w ago
Nature Chemical Biology, Published online: 09 July 2024; doi:10.1038/s41589-024-01665-7 González-Delgado et al. developed retron-based editors termed multitrons, which can modify multiple sites on a single genome simultaneously. This technology is compatible with recombineering in prokaryotes and CRISPR editing in eukaryotes with applications in molecular recording, genome minimization and metabolic engineering ..read more
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Assessing and engineering the IscB–ωRNA system for programmed genome editing
Nature Chemical Biology
by Hao Yan, Xiaoqing Tan, Siyuan Zou, Yihong Sun, Ailong Ke, Weixin Tang
2w ago
Nature Chemical Biology, Published online: 08 July 2024; doi:10.1038/s41589-024-01669-3 Through rational protein engineering and structure-guided ωRNA engineering, the ωRNA-guided endonuclease IscB system was developed into a highly efficient and compact genome-editing tool ..read more
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Cas1 mediates the interference stage in a phage-encoded CRISPR–Cas system
Nature Chemical Biology
by Laixing Zhang, Hao Wang, Jianwei Zeng, Xueli Cao, Zhengyu Gao, Zihe Liu, Feixue Li, Jiawei Wang, Yi Zhang, Maojun Yang, Yue Feng
2w ago
Nature Chemical Biology, Published online: 08 July 2024; doi:10.1038/s41589-024-01659-5 The ICP1 (International Center for Diarrheal Disease Research, Bangladesh cholera phage 1) clustered regularly interspaced short palindromic repeats (CRISPR)–Cas system, which lacks the helical bundle domain in Cas8f, uses Cas1 to mediate the interference stage by connecting Cas2/3 to the DNA-bound CRISPR-associated complex for antiviral defense (Cascade ..read more
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