Genomic considerations for FHIR®; eMERGE implementation lessons
Allegiance Health
by AHS
3y ago
J Biomed Inform . 2021 Jun;118:103795. doi: 10.1016/j.jbi.2021.103795. Epub 2021 Apr 28. Mullai Murugan  1, Lawrence J Babb  2, Casey Overby Taylor  3, Luke V Rasmussen  4, Robert R Freimuth  5, Eric Venner  6, Fei Yan  7, Victoria Yi  7, Stephen J Granite  3, Hana Zouk  8, Samuel J Aronson  9, Kevin Power  10, Alex Fedotov  11, David R Crosslin  12, David Fasel  13, Gail P Jarvik  14, Hakon Hakonarson  15, Hana Bang ..read more
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Digital media archive for gross pathology images based on open-source tools and Fast Healthcare Interoperability Resources (FHIR)
Allegiance Health
by AHS
3y ago
Macroscopic examination of surgical pathology and autopsy cases is a fundamental component of anatomic pathology. The photographic documentation of such clinical specimens is essential, and it may be required in certain instances. Our department began using consumer-grade digital cameras in 2005 to improve the practice of gross photography. However, the lack of an application to correctly catalog the photographs resulted in thousands of digital image files scattered across shared network drives, with limited case and patient metadata, making image retrieval a cumbersome and sometimes impossib ..read more
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HIStream-Import: A Generic ETL Framework for Processing Arbitrary Patient Data Collections or Hospital Information Systems into HL7 FHIR Bundles
Allegiance Health
by AHS
3y ago
Stud Health Technol Inform . 2021 May 24;278:75-79. doi: 10.3233/SHTI210053. Affiliations Expand Affiliations 1 Universities Gießen and Marburg Lung Center (UGMLC), Giessen, Germany. 2 Institute of Medical Informatics, Medical Faculty of RWTH University Aachen, Aachen, Germany. Item in Clipboard Raphael W Majeed et al. Stud Health Technol Inform. 2021. Show details Display options Display options Format Stud Health Technol Inform . 2021 May 24;278:75-79. doi: 10.3233/SHTI210053. Affiliations 1 Universities Gießen and Marburg Lung Center (UGMLC), Giessen ..read more
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Fast Healthcare Interoperability Resources (FHIR) as a Meta Model to Integrate Common Data Models: Development of a Tool and Quantitative Validation Study
Allegiance Health
by AHS
3y ago
Background: In a multisite clinical research collaboration, institutions may or may not use the same common data model (CDM) to store clinical data. To overcome this challenge, we proposed to use Health Level 7’s Fast Healthcare Interoperability Resources (FHIR) as a meta-CDM-a single standard to represent clinical data. Objective: In this study, we aimed to create an open-source application termed the Clinical Asset Mapping Program for FHIR (CAMP FHIR) to efficiently transform clinical data to FHIR for supporting source-agnostic CDM-to-FHIR mapping. Methods: Mapping with CAMP FHIR involv ..read more
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Developing a FHIR-based EHR phenotyping framework: A case study for identification of patients with obesity and multiple comorbidities from discharge summaries
Allegiance Health
by AHS
3y ago
Background: Standards-based clinical data normalization has become a key component of effective data integration and accurate phenotyping for secondary use of electronic healthcare records (EHR) data. HL7 Fast Healthcare Interoperability Resources (FHIR) is an emerging clinical data standard for exchanging electronic healthcare data and has been used in modeling and integrating both structured and unstructured EHR data for a variety of clinical research applications. The overall objective of this study is to develop and evaluate a FHIR-based EHR phenotyping framework for identification of p ..read more
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Automated Production of Research Data Marts from a Canonical Fast Healthcare Interoperability Resource (FHIR) Data Repository: Applications to COVID-19 Research
Allegiance Health
by AHS
3y ago
Objective: The rapidly evolving COVID-19 pandemic has created a need for timely data from the healthcare systems for research. To meet this need, several large new data consortia have developed that require frequent updating and sharing of electronic health record (EHR) data in different common data models (CDMs) to create multi-institutional databases for research. Traditionally, each CDM has had a custom pipeline for extract, transform and load operations for production and incremental updates of data feeds to the networks from raw EHR data. However, the demands of COVID-19 research for ti ..read more
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Genomic considerations for FHIR®; eMERGE implementation lessons
Allegiance Health
by AHS
3y ago
J Biomed Inform . 2021 Apr 28;118:103795. doi: 10.1016/j.jbi.2021.103795. Online ahead of print. Mullai Murugan  1, Lawrence J Babb  2, Casey Overby Taylor  3, Luke V Rasmussen  4, Robert R Freimuth  5, Eric Venner  6, Fei Yan  7, Victoria Yi  7, Stephen J Granite  3, Hana Zouk  8, Samuel J Aronson  9, Kevin Power  10, Alex Fedotov  11, David R Crosslin  12, David Fasel  13, Gail P Jarvik  14, Hakon Hakonarson  15, H ..read more
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(IT) Senior .NET Software Engineer – Healthcare SAAS
Allegiance Health
by AHS
3y ago
You are being automatically redirected to another website where you should be able to apply for this job. If you are not redirected click Continue. Please note JobServe is not responsible for the application process on an external website. The post (IT) Senior .NET Software Engineer – Healthcare SAAS appeared first on Allegiance Healthcare Solutions LLCHealthcare Integration Software & Services ..read more
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Digital media archive for gross pathology images based on open-source tools and Fast Healthcare Interoperability Resources (FHIR)
Allegiance Health
by AHS
3y ago
Macroscopic examination of surgical pathology and autopsy cases is a fundamental component of anatomic pathology. The photographic documentation of such clinical specimens is essential, and it may be required in certain instances. Our department began using consumer-grade digital cameras in 2005 to improve the practice of gross photography. However, the lack of an application to correctly catalog the photographs resulted in thousands of digital image files scattered across shared network drives, with limited case and patient metadata, making image retrieval a cumbersome and sometimes impossib ..read more
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FhirSpark – Implementing a Mediation Layer to Bring FHIR to the cBioPortal for Cancer Genomics
Allegiance Health
by AHS
3y ago
Stud Health Technol Inform . 2021 May 27;281:303-307. doi: 10.3233/SHTI210169. Affiliations Expand Affiliations 1 Group for Medical Systems Biology, Lübeck Institute of Experimental Dermatology, University of Lübeck, Germany. 2 Department of Medical Informatics, Friedrich-Alexander-Universität Erlangen-Nürnberg, Erlangen, Germany. 3 IT Center for Clinical Research, University of Lübeck, Germany. 4 Institute of Medical Informatics, University of Lübeck, Germany. Item in Clipboard Niklas Reimer et al. Stud Health Technol Inform. 2021. Show details Display options Displa ..read more
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