Observations about Helicos, a single molecule sequencer from 2008
Next Generation Technologist
by Dale Yuzuki
8M ago
Take a look at the latest blog post from Dale Yuzuki, published on the Silent Valley Consulting website, about a technology from 2008 to 2011 that was the world’s first “true single molecule sequencer”. You can access the post here. Source ..read more
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Silent Valley Consulting – open for business
Next Generation Technologist
by Dale Yuzuki
8M ago
Several years ago during the publishing of the book about COVID-19 diagnostics, therapeutics and vaccines (“Chaos to Cure”), I registered a business with the state of Maryland called Silent Valley Incorporated. Recently with a change in my work situation at Olink (here’s the announcement a few weeks ago over LinkedIn) I went ahead and made myself available for consulting. The website went live... Source ..read more
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Proteomics in Proximity: Co-Hosting a New Podcast
Next Generation Technologist
by Dale Yuzuki
8M ago
Do you listen to podcasts? Would you be interested in learning about how Olink Proteomics’ technology is applied in biomarker discovery, drug discovery, proteogenomics, and routine research into biological mechanisms? If so, here’s the first ‘teaser’ advertisement, and we will be launching the first episode in a week. You can listen to the episode by clicking ‘play’, and subscribe wherever you... Source ..read more
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Discovery of a novel mechanism unique to severe COVID leads to a potential treatment
Next Generation Technologist
by Dale Yuzuki
8M ago
A few weeks ago you read about the depth of the UK BioBank which I called a ‘veritable fountain of discovery’ along with five interesting results and hints of what’s to come in the future. Combining many thousands of individuals where both genomic variation data along with circulating protein data will lead to new understandings of the mechanisms of disease, new protein targets to assist in... Source ..read more
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A 2022 NGS Cost and Throughput Comparison
Next Generation Technologist
by Dale Yuzuki
8M ago
After spending some time in Los Angeles this week visiting a few existing and potential customers for Olink Proteomics, I was able to talk with a few friends about their perspective at this particular juncture in the NGS sequencing field. One of the big questions we discussed is what is needed to push the entire field forward, and a consensus is that it is not in the cost and throughput area... Source ..read more
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Element Biosciences AVITI™ Sequencing System
Next Generation Technologist
by Dale Yuzuki
8M ago
For a technology that started in 2005 with the first 454 / Roche FLX next-generation sequencing (NGS) platform, followed in 2007 with the Solexa / Illumina Genome Analyzer, and then in 2010 with the Ion Torrent / Life Technologies / Thermo Fisher Scientific Personal Genome Machine (now known as Genexus), the NGS market has grown to be about a $6 Billion market. Single-molecule technologies (aka... Source ..read more
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Combining genomics with proteomics opens a new era of discovery
Next Generation Technologist
by Dale Yuzuki
8M ago
That summer day in 2000 was a memorable one: President Bill Clinton with Prime Minister Tony Blair, then-NHGRI Director Francis Collins, and then-CEO of Celera Craig Venter announcing the draft map of the Human Genome Project. To quote a transcript of the event: The optimism of this event (along with the sequence draft analyses published by the competing NGHRI and Celera groups simultaneously in... Source ..read more
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The UK Biobank – a veritable fountain of discovery
Next Generation Technologist
by Dale Yuzuki
8M ago
The UK Biobank (abbreviated UKB or UKBB) began in 2006 as a long-term study to investigate the ‘respective contributions of genetic predisposition and environmental exposure (including nutrition, lifestyle, medications etc.) to the development of disease’ per Wikipedia. Over the course of four years (2006 to 2010) 22 collection centers across the United Kingdom those born between 1937 and 1970... Source ..read more
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Single-cell interaction technology from Scribe Biosciences
Next Generation Technologist
by Dale Yuzuki
8M ago
Way back in 2009 I remember the first time my sales manager at RainDance Technologies presented their core technology to a sophisticated group at the US National Institutes of Health, with an introduction to microfluidics. He began by saying “Microfluidics has gotten a poor reputation in the life sciences…” and that was a saying that has stuck with me. Later that same year I struggled to close (in... Source ..read more
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A new proteomic instrument: The Olink Signature Q100
Next Generation Technologist
by Dale Yuzuki
8M ago
Olink started its commercial laboratory in the Boston area in 2016, based upon the Proximity Extension Assay technology and method published in a 2014 PLoS One paper entitled “Homogenous 96-plex PEA immunoassay exhibiting high sensitivity, specificity, and excellent scalability”. One interesting aspect of this technology (and subsequent iterations) is how the 96-well plate format and the setup of... Source ..read more
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